The Dominion War is over, but an old enemy returns, the Borg, The player takes the role of pilot Ryan Cooper, a newly graduated member of the famous Red Squad composed entirely of elite cadets. Cooper is assigned to Federation starship U.S.S. Typhon under Lieutenant Commander Worf. The game is a space combat simulation. At first, the Borg present a deadly threat, until a new unknown and even more dangerous enemy appears. The Kam'Jahtae are the descendants of an ancient alien race that Klingon fought centuries ago, and they want the Alpha Quadrant as well.